| SNPs Id | Position | Function |
| Scaffold_13 | 3269437 | Probable pectate lyase 1 (EC 4.2.2.2) (Pectate lyase A1) |
| Scaffold_13 | 3375807 | Unannotated |
| Scaffold_13 | 3419539 | Unannotated |
| Scaffold_13 | 3505453 | LRR receptor-like serine/threonine-protein kinase GSO1 (EC 2.7.11.1) (Protein GASSHO 1) (Protein SCHENGEN 3) |
| Scaffold_13 | 3506966 | Unannotated |
| Scaffold_13 | 3508763 | Unannotated |
| Scaffold_14 | 75954 | Unannotated |
| Scaffold_14 | 77938 | Unannotated |
| Scaffold_14 | 105123 | Unannotated |
| Scaffold_14 | 586938 | Unannotated |
| Scaffold_14 | 724915 | Unannotated |
| Scaffold_14 | 1356306 | Unannotated |
| Scaffold_14 | 1402054 | Unannotated |
| Scaffold_14 | 1721760 | Unannotated |
| Scaffold_14 | 1940920 | Unannotated |
| Scaffold_14 | 1997891 | Unannotated |
| Scaffold_14 | 2010051 | F-box/kelch-repeat protein At5g60570 |
| Scaffold_14 | 2010063 | Unannotated |
| Scaffold_15 | 256342 | Unannotated |
| Scaffold_15 | 256351 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |