| SNPs Id | Position | Function |
| Scaffold_3281 | 35145 | Unannotated |
| Scaffold_3281 | 35146 | Unannotated |
| Scaffold_3283 | 43427 | Unannotated |
| Scaffold_3290 | 61482 | Unannotated |
| Scaffold_3299 | 27203 | Unannotated |
| Scaffold_3300 | 5905 | Unannotated |
| Scaffold_3300 | 5906 | Unannotated |
| Scaffold_3301 | 331 | Unannotated |
| Scaffold_3303 | 1209 | tRNA ligase 1 (AtRLG1) (AtRNL) (AtRlg1p) (EC 6.5.1.3) (Protein AT.I.24-9) |
| Scaffold_3303 | 1210 | tRNA ligase 1 (AtRLG1) (AtRNL) (AtRlg1p) (EC 6.5.1.3) (Protein AT.I.24-9) |
| Scaffold_3306 | 39797 | Unannotated |
| Scaffold_3307 | 60415 | Unannotated |
| Scaffold_3307 | 60416 | Unannotated |
| Scaffold_3307 | 60419 | UDP-glucose 6-dehydrogenase 1 (UDP-Glc dehydrogenase 1) (UDP-GlcDH 1) (UDPGDH 1) (EC 1.1.1.22) (Gm-UGD1) |
| Scaffold_3307 | 60447 | UDP-glucose 6-dehydrogenase 1 (UDP-Glc dehydrogenase 1) (UDP-GlcDH 1) (UDPGDH 1) (EC 1.1.1.22) (Gm-UGD1) |
| Scaffold_3307 | 60449 | Unannotated |
| Scaffold_3312 | 18627 | Unannotated |
| Scaffold_3312 | 18657 | Unannotated |
| Scaffold_3326 | 44106 | Unannotated |
| Scaffold_3333 | 48161 | Unannotated |