| SNPs Id | Position | Function |
| Scaffold_3340 | 42675 | Unannotated |
| Scaffold_3350 | 79898 | Unannotated |
| Scaffold_3353 | 22280 | Unannotated |
| Scaffold_3358 | 4180 | Unannotated |
| Scaffold_3360 | 41443 | Unannotated |
| Scaffold_3360 | 41444 | Unannotated |
| Scaffold_3361 | 26476 | DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) |
| Scaffold_3362 | 3264 | Unannotated |
| Scaffold_3362 | 3411 | Unannotated |
| Scaffold_3365 | 7775 | Unannotated |
| Scaffold_3370 | 52287 | Unannotated |
| Scaffold_3370 | 52292 | COMPASS-like H3K4 histone methylase component WDR5A (AtWDR5A) |
| Scaffold_3376 | 41662 | Unannotated |
| Scaffold_3376 | 41720 | Unannotated |
| Scaffold_3378 | 15267 | ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) |
| Scaffold_3378 | 15290 | Unannotated |
| Scaffold_3378 | 15407 | Unannotated |
| Scaffold_3379 | 3285 | Unannotated |
| Scaffold_3380 | 27226 | Unannotated |
| Scaffold_3380 | 27407 | Unannotated |