| SNPs Id | Position | Function |
| Scaffold_3521 | 51242 | Unannotated |
| Scaffold_3521 | 65099 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3521 | 65229 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3529 | 15579 | Unannotated |
| Scaffold_3529 | 15588 | Unannotated |
| Scaffold_3532 | 49187 | Unannotated |
| Scaffold_3532 | 49212 | Unannotated |
| Scaffold_3532 | 49216 | Unannotated |
| Scaffold_3532 | 49469 | Unannotated |
| Scaffold_3532 | 49542 | Unannotated |
| Scaffold_3532 | 49696 | Unannotated |
| Scaffold_3532 | 49706 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3533 | 16160 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3533 | 16168 | Unannotated |
| Scaffold_3533 | 16169 | Unannotated |
| Scaffold_3533 | 16174 | Unannotated |
| Scaffold_3533 | 16182 | Unannotated |
| Scaffold_3533 | 16183 | Unannotated |
| Scaffold_3533 | 16197 | Unannotated |
| Scaffold_3533 | 16201 | Unannotated |