| SNPs Id | Position | Function |
| Scaffold_3538 | 16464 | Unannotated |
| Scaffold_3540 | 27165 | Unannotated |
| Scaffold_3544 | 24367 | Unannotated |
| Scaffold_3559 | 42357 | Unannotated |
| Scaffold_3559 | 42415 | Unannotated |
| Scaffold_3559 | 42605 | Unannotated |
| Scaffold_3562 | 1049 | Unannotated |
| Scaffold_3566 | 44550 | Unannotated |
| Scaffold_3566 | 44631 | Unannotated |
| Scaffold_3566 | 44660 | Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47) |
| Scaffold_3572 | 13813 | Unannotated |
| Scaffold_3572 | 13996 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3575 | 6910 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3576 | 23849 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3584 | 15255 | Unannotated |
| Scaffold_3585 | 46409 | Unannotated |
| Scaffold_3585 | 46786 | Unannotated |
| Scaffold_3585 | 46804 | Unannotated |
| Scaffold_3587 | 31958 | Unannotated |
| Scaffold_3590 | 42945 | NADH-ubiquinone oxidoreductase chain 3 (EC 7.1.1.2) (NADH dehydrogenase subunit 3) |