| SNPs Id | Position | Function |
| Scaffold_3591 | 35790 | Unannotated |
| Scaffold_3595 | 51986 | ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) |
| Scaffold_3595 | 51990 | Unannotated |
| Scaffold_3595 | 51999 | Unannotated |
| Scaffold_3595 | 52017 | Unannotated |
| Scaffold_3597 | 27865 | Unannotated |
| Scaffold_3601 | 15152 | Unannotated |
| Scaffold_3603 | 15996 | Unannotated |
| Scaffold_3603 | 16016 | Unannotated |
| Scaffold_3603 | 16017 | Unannotated |
| Scaffold_3603 | 16083 | Unannotated |
| Scaffold_3603 | 16092 | Unannotated |
| Scaffold_3605 | 9329 | Unannotated |
| Scaffold_3609 | 31180 | Unannotated |
| Scaffold_3612 | 7622 | F-box/WD-40 repeat-containing protein At5g21040 |
| Scaffold_3612 | 13864 | Unannotated |
| Scaffold_3612 | 21988 | Unannotated |
| Scaffold_3612 | 23757 | Unannotated |
| Scaffold_3612 | 41613 | Unannotated |
| Scaffold_3612 | 41646 | Unannotated |