| SNPs Id | Position | Function |
| Scaffold_3748 | 37315 | Unannotated |
| Scaffold_3752 | 5351 | Unannotated |
| Scaffold_3761 | 36855 | Unannotated |
| Scaffold_3763 | 3693 | Unannotated |
| Scaffold_3767 | 50566 | Unannotated |
| Scaffold_3771 | 12553 | Unannotated |
| Scaffold_3771 | 12835 | Ribosomal protein S3, mitochondrial |
| Scaffold_3773 | 2486 | Ribosomal protein S3, mitochondrial |
| Scaffold_3774 | 8415 | Unannotated |
| Scaffold_3774 | 8484 | Unannotated |
| Scaffold_3780 | 44368 | Unannotated |
| Scaffold_3784 | 45593 | Unannotated |
| Scaffold_3786 | 30323 | Unannotated |
| Scaffold_3787 | 43883 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1) |
| Scaffold_3787 | 44085 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1) |
| Scaffold_3788 | 45383 | Unannotated |
| Scaffold_3788 | 46872 | Unannotated |
| Scaffold_3789 | 20867 | Unannotated |
| Scaffold_3789 | 22595 | Unannotated |
| Scaffold_3792 | 35050 | Unannotated |