| SNPs Id | Position | Function |
| Scaffold_3798 | 5901 | Unannotated |
| Scaffold_3801 | 8042 | Unannotated |
| Scaffold_3803 | 20484 | Unannotated |
| Scaffold_3803 | 20581 | Unannotated |
| Scaffold_3803 | 20678 | Unannotated |
| Scaffold_3806 | 3711 | Unannotated |
| Scaffold_3806 | 44116 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3806 | 44121 | Unannotated |
| Scaffold_3806 | 44488 | 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3) |
| Scaffold_3811 | 59158 | Unannotated |
| Scaffold_3822 | 1439 | Unannotated |
| Scaffold_3824 | 10730 | Unannotated |
| Scaffold_3824 | 10738 | Unannotated |
| Scaffold_3824 | 10757 | Unannotated |
| Scaffold_3824 | 10765 | Unannotated |
| Scaffold_3824 | 10865 | Unannotated |
| Scaffold_3832 | 18421 | Unannotated |
| Scaffold_3832 | 18865 | Unannotated |
| Scaffold_3834 | 31205 | Unannotated |
| Scaffold_3841 | 45667 | Unannotated |