| SNPs Id | Position | Function |
| Scaffold_4 | 2141109 | Unannotated |
| Scaffold_4 | 2291953 | Unannotated |
| Scaffold_5 | 860102 | Probable 2-oxoglutarate-dependent dioxygenase JRG21 (EC 1.14.11.-) (Protein JASMONATE-REGULATED GENE 21) |
| Scaffold_5 | 968859 | Probable LRR receptor-like serine/threonine-protein kinase IRK (EC 2.7.11.1) (Inflorescence and root apices receptor-like kinase) |
| Scaffold_5 | 968887 | Unannotated |
| Scaffold_5 | 992602 | Galactan beta-1,4-galactosyltransferase GALS3 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 3) |
| Scaffold_5 | 997645 | Galactan beta-1,4-galactosyltransferase GALS3 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 3) |
| Scaffold_5 | 1265637 | Unannotated |
| Scaffold_5 | 1707925 | Unannotated |
| Scaffold_5 | 1715493 | Linoleate 9S-lipoxygenase 6 (EC 1.13.11.58) (Lipoxygenase 1-5) (StLOX1) (lox1:St:3) (Fragment) |
| Scaffold_6 | 174667 | Unannotated |
| Scaffold_6 | 174670 | Unannotated |
| Scaffold_6 | 174702 | Unannotated |
| Scaffold_6 | 174704 | Unannotated |
| Scaffold_6 | 270879 | Unannotated |
| Scaffold_6 | 413030 | Unannotated |
| Scaffold_6 | 413659 | Unannotated |
| Scaffold_6 | 957165 | Serine/threonine-protein kinase VPS15 (EC 2.7.11.1) (Vacuolar protein sorting-associated protein 15) (AtVPS15) |
| Scaffold_6 | 1207714 | Unannotated |
| Scaffold_6 | 1554140 | Unannotated |