| SNPs Id | Position | Function |
| Scaffold_15 | 144725 | Unannotated |
| Scaffold_15 | 428597 | Violaxanthin de-epoxidase, chloroplastic (EC 1.23.5.1) |
| Scaffold_15 | 863093 | Unannotated |
| Scaffold_15 | 1219791 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_15 | 1219792 | Eukaryotic initiation factor 4A-8 (eIF-4A-8) (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A-8) |
| Scaffold_15 | 1366301 | Unannotated |
| Scaffold_15 | 1378876 | Unannotated |
| Scaffold_15 | 1378879 | Unannotated |
| Scaffold_15 | 1382206 | Unannotated |
| Scaffold_15 | 1382208 | Unannotated |
| Scaffold_15 | 1482292 | Unannotated |
| Scaffold_15 | 1921218 | Unannotated |
| Scaffold_15 | 2240056 | Unannotated |
| Scaffold_15 | 2249138 | Unannotated |
| Scaffold_16 | 109675 | Unannotated |
| Scaffold_16 | 109676 | Unannotated |
| Scaffold_16 | 208108 | Unannotated |
| Scaffold_16 | 333082 | Unannotated |
| Scaffold_16 | 1131591 | Unannotated |
| Scaffold_16 | 1131592 | Unannotated |