| SNPs Id | Position | Function |
| Scaffold_16 | 1195341 | Unannotated |
| Scaffold_16 | 1210606 | Unannotated |
| Scaffold_16 | 1308684 | Unannotated |
| Scaffold_16 | 1312501 | Unannotated |
| Scaffold_16 | 1312868 | Unannotated |
| Scaffold_16 | 1312869 | Unannotated |
| Scaffold_16 | 1318946 | Unannotated |
| Scaffold_16 | 1499543 | Unannotated |
| Scaffold_16 | 1599996 | Unannotated |
| Scaffold_16 | 1657033 | Pentatricopeptide repeat-containing protein At1g79080, chloroplastic |
| Scaffold_16 | 1915451 | Unannotated |
| Scaffold_16 | 1915548 | Unannotated |
| Scaffold_16 | 1939359 | Unannotated |
| Scaffold_17 | 464338 | Unannotated |
| Scaffold_17 | 563446 | Unannotated |
| Scaffold_17 | 840923 | Unannotated |
| Scaffold_17 | 987577 | 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM) |
| Scaffold_17 | 1434052 | Unannotated |
| Scaffold_17 | 1609845 | Unannotated |
| Scaffold_17 | 1609847 | Unannotated |