| SNPs Id | Position | Function |
| Scaffold_27 | 1692371 | Unannotated |
| Scaffold_27 | 1787516 | Unannotated |
| Scaffold_28 | 250036 | Unannotated |
| Scaffold_28 | 464872 | Unannotated |
| Scaffold_28 | 575582 | Unannotated |
| Scaffold_28 | 575683 | Unannotated |
| Scaffold_28 | 754768 | Unannotated |
| Scaffold_28 | 802131 | Unannotated |
| Scaffold_28 | 912449 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 (OsLecRK3) (EC 2.7.11.1) (OsRLCK135) |
| Scaffold_28 | 912450 | Unannotated |
| Scaffold_28 | 964411 | Unannotated |
| Scaffold_28 | 1465888 | Unannotated |
| Scaffold_28 | 1828146 | Unannotated |
| Scaffold_29 | 25600 | Unannotated |
| Scaffold_29 | 198859 | Pentatricopeptide repeat-containing protein At5g39980, chloroplastic |
| Scaffold_29 | 908133 | Alpha-glucan water dikinase, chloroplastic (EC 2.7.9.4) (Starch-related protein R1) |
| Scaffold_29 | 985496 | Unannotated |
| Scaffold_29 | 1318174 | Unannotated |
| Scaffold_29 | 1417020 | Unannotated |
| Scaffold_29 | 1496694 | Unannotated |