| SNPs Id | Position | Function |
| Scaffold_54 | 1538351 | Unannotated |
| Scaffold_55 | 273374 | Unannotated |
| Scaffold_55 | 333127 | Unannotated |
| Scaffold_55 | 448276 | Trafficking protein particle complex II-specific subunit 130 homolog (AtTRS130) (TRAPP II-specific subunit 130 homolog) |
| Scaffold_55 | 936391 | Unannotated |
| Scaffold_55 | 1001444 | tRNAse Z TRZ4, mitochondrial (EC 3.1.26.11) (Long tRNase Z 2) (tRNase ZL2) (AthTRZL2) |
| Scaffold_55 | 1002374 | tRNAse Z TRZ4, mitochondrial (EC 3.1.26.11) (Long tRNase Z 2) (tRNase ZL2) (AthTRZL2) |
| Scaffold_55 | 1040823 | tRNAse Z TRZ4, mitochondrial (EC 3.1.26.11) (Long tRNase Z 2) (tRNase ZL2) (AthTRZL2) |
| Scaffold_55 | 1229231 | Unannotated |
| Scaffold_55 | 1476902 | Unannotated |
| Scaffold_55 | 1479835 | Unannotated |
| Scaffold_55 | 1499371 | Unannotated |
| Scaffold_56 | 34251 | Unannotated |
| Scaffold_56 | 210635 | Unannotated |
| Scaffold_56 | 454251 | Unannotated |
| Scaffold_56 | 561020 | Unannotated |
| Scaffold_56 | 1267370 | Unannotated |
| Scaffold_57 | 233376 | Unannotated |
| Scaffold_57 | 752469 | Unannotated |
| Scaffold_57 | 891358 | Unannotated |