| SNPs Id | Position | Function |
| Scaffold_62 | 1439241 | Unannotated |
| Scaffold_62 | 1545369 | Unannotated |
| Scaffold_63 | 177552 | Unannotated |
| Scaffold_63 | 177553 | Unannotated |
| Scaffold_63 | 1050311 | Unannotated |
| Scaffold_63 | 1122256 | Granule-bound starch synthase 2, chloroplastic/amyloplastic (EC 2.4.1.21) (Granule-bound starch synthase II) (GBSS-II) (SS II) |
| Scaffold_63 | 1261652 | Unannotated |
| Scaffold_63 | 1462081 | Unannotated |
| Scaffold_63 | 1515994 | Unannotated |
| Scaffold_63 | 1536354 | Unannotated |
| Scaffold_64 | 191152 | Unannotated |
| Scaffold_64 | 516734 | Unannotated |
| Scaffold_64 | 516735 | Unannotated |
| Scaffold_64 | 516835 | Unannotated |
| Scaffold_64 | 819359 | Unannotated |
| Scaffold_64 | 1144897 | Unannotated |
| Scaffold_65 | 24907 | Unannotated |
| Scaffold_65 | 36620 | Protein CHROMATIN REMODELING 4 (AtCHR4) (EC 3.6.4.-) (Protein PICKLE RELATED 1) |
| Scaffold_65 | 176093 | Unannotated |
| Scaffold_65 | 176095 | Unannotated |