| SNPs Id | Position | Function |
| Scaffold_130 | 99087 | Unannotated |
| Scaffold_131 | 59932 | Unannotated |
| Scaffold_131 | 403314 | Unannotated |
| Scaffold_131 | 568970 | Unannotated |
| Scaffold_132 | 354505 | Unannotated |
| Scaffold_133 | 48419 | Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) |
| Scaffold_133 | 48420 | Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) |
| Scaffold_133 | 162478 | Unannotated |
| Scaffold_134 | 21565 | Unannotated |
| Scaffold_134 | 243260 | Unannotated |
| Scaffold_134 | 319829 | Chromatin modification-related protein EAF1 B (ESA1-associated factor 1 B) |
| Scaffold_134 | 392366 | Unannotated |
| Scaffold_134 | 392914 | Unannotated |
| Scaffold_135 | 9927 | Unannotated |
| Scaffold_135 | 9928 | Unannotated |
| Scaffold_136 | 87840 | Unannotated |
| Scaffold_136 | 201507 | Unannotated |
| Scaffold_138 | 240058 | Unannotated |
| Scaffold_138 | 255805 | Sulfite reductase [ferredoxin], chloroplastic (GmSiR) (EC 1.8.7.1) (Nucleoid DNA-compacting protein of 68 kDa) (Fragment) |
| Scaffold_140 | 7324 | Glutamate decarboxylase 1 (GAD 1) (EC 4.1.1.15) |