| SNPs Id | Position | Function |
| Scaffold_140 | 40519 | Unannotated |
| Scaffold_140 | 75462 | Pentatricopeptide repeat-containing protein At5g39710 (Protein EMBRYO DEFECTIVE 2745) |
| Scaffold_140 | 98991 | Pentatricopeptide repeat-containing protein At5g39710 (Protein EMBRYO DEFECTIVE 2745) |
| Scaffold_140 | 98992 | Unannotated |
| Scaffold_140 | 318327 | Unannotated |
| Scaffold_140 | 455869 | Unannotated |
| Scaffold_140 | 455968 | Unannotated |
| Scaffold_140 | 517832 | Unannotated |
| Scaffold_140 | 546482 | Unannotated |
| Scaffold_141 | 302409 | Unannotated |
| Scaffold_141 | 418058 | T-complex protein 1 subunit gamma (TCP-1-gamma) (CCT-gamma) (Chaperonin CCT3) |
| Scaffold_141 | 532158 | T-complex protein 1 subunit gamma (TCP-1-gamma) (CCT-gamma) (Chaperonin CCT3) |
| Scaffold_141 | 532159 | Unannotated |
| Scaffold_143 | 125358 | Unannotated |
| Scaffold_143 | 391458 | Unannotated |
| Scaffold_143 | 421349 | F-box/LRR-repeat protein At4g29420 |
| Scaffold_143 | 495659 | Unannotated |
| Scaffold_143 | 495698 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_144 | 82631 | Unannotated |
| Scaffold_144 | 447145 | Unannotated |