| SNPs Id | Position | Function |
| Scaffold_150 | 31017 | Unannotated |
| Scaffold_150 | 254301 | Unannotated |
| Scaffold_150 | 262104 | Unannotated |
| Scaffold_150 | 279048 | Unannotated |
| Scaffold_150 | 524938 | Protein EXECUTER 2, chloroplastic (OsEX2) |
| Scaffold_150 | 559611 | Unannotated |
| Scaffold_150 | 559614 | Unannotated |
| Scaffold_150 | 687945 | Unannotated |
| Scaffold_151 | 248846 | Unannotated |
| Scaffold_151 | 376657 | Unannotated |
| Scaffold_152 | 155811 | Unannotated |
| Scaffold_152 | 205543 | Unannotated |
| Scaffold_152 | 205643 | Unannotated |
| Scaffold_152 | 238720 | Unannotated |
| Scaffold_152 | 352706 | Unannotated |
| Scaffold_152 | 489454 | Unannotated |
| Scaffold_152 | 537889 | Unannotated |
| Scaffold_152 | 623560 | Unannotated |
| Scaffold_153 | 440449 | Unannotated |
| Scaffold_154 | 30910 | Pentatricopeptide repeat-containing protein At2g01860 (Protein EMBRYO DEFECTIVE 975) |