| SNPs Id | Position | Function |
| Scaffold_23 | 1055698 | Unannotated |
| Scaffold_23 | 1183050 | Unannotated |
| Scaffold_23 | 1204334 | Unannotated |
| Scaffold_23 | 1204335 | Unannotated |
| Scaffold_23 | 1467540 | Unannotated |
| Scaffold_23 | 1619132 | Unannotated |
| Scaffold_23 | 1687324 | Unannotated |
| Scaffold_23 | 1687652 | Unannotated |
| Scaffold_23 | 1828894 | Pentatricopeptide repeat-containing protein At4g20770 |
| Scaffold_24 | 203046 | Unannotated |
| Scaffold_24 | 358003 | Pentatricopeptide repeat-containing protein At1g80270, mitochondrial |
| Scaffold_24 | 358004 | Pentatricopeptide repeat-containing protein At1g80270, mitochondrial |
| Scaffold_24 | 621106 | Unannotated |
| Scaffold_24 | 639084 | Unannotated |
| Scaffold_24 | 751237 | Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 (Zinc finger protein STOP1) |
| Scaffold_24 | 864158 | Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 (Zinc finger protein STOP1) |
| Scaffold_24 | 943264 | Unannotated |
| Scaffold_24 | 943800 | Unannotated |
| Scaffold_24 | 1062729 | Unannotated |
| Scaffold_24 | 1130257 | Unannotated |