| SNPs Id | Position | Function |
| Scaffold_237 | 12353 | Unannotated |
| Scaffold_241 | 6186 | GDSL esterase/lipase CPRD49 (EC 3.1.1.-) (Extracellular lipase CPRD49) |
| Scaffold_241 | 6187 | Disease resistance protein RPP13 (Resistance to Peronospora parasitica protein 13) |
| Scaffold_243 | 15490 | Unannotated |
| Scaffold_249 | 10673 | Unannotated |
| Scaffold_264 | 1604 | Unannotated |
| Scaffold_264 | 79488 | Unannotated |
| Scaffold_266 | 44972 | ABC transporter B family member 1 (ABC transporter ABCB.1) (AtABCB1) (Multidrug resistance protein 1) (P-glycoprotein 1) (AtPgp1) |
| Scaffold_269 | 15417 | ABC transporter B family member 1 (ABC transporter ABCB.1) (AtABCB1) (Multidrug resistance protein 1) (P-glycoprotein 1) (AtPgp1) |
| Scaffold_269 | 15418 | Pentatricopeptide repeat-containing protein At1g30610, chloroplastic (Protein EMBRYO DEFECTIVE 2279) |
| Scaffold_285 | 7930 | Pentatricopeptide repeat-containing protein At1g30610, chloroplastic (Protein EMBRYO DEFECTIVE 2279) |
| Scaffold_289 | 48697 | Unannotated |
| Scaffold_289 | 48798 | Unannotated |
| Scaffold_289 | 48799 | Unannotated |
| Scaffold_290 | 82538 | Unannotated |
| Scaffold_290 | 82539 | Putative alpha-L-fucosidase 1 (EC 3.2.1.51) (Alpha-L-fucoside fucohydrolase) |
| Scaffold_291 | 53849 | Unannotated |
| Scaffold_292 | 10612 | Unannotated |
| Scaffold_292 | 15045 | Subtilisin-like protease Glyma18g48580 (EC 3.4.21.-) [Cleaved into: Subtilase peptide GmSubPep (Glycine max subtilase peptide) (GmSubPep)] |
| Scaffold_294 | 27563 | Scarecrow-like protein 3 (AtSCL3) (GRAS family protein 5) (AtGRAS-5) |