| SNPs Id | Position | Function |
| Scaffold_306 | 66246 | Scarecrow-like protein 3 (AtSCL3) (GRAS family protein 5) (AtGRAS-5) |
| Scaffold_306 | 66247 | Scarecrow-like protein 3 (AtSCL3) (GRAS family protein 5) (AtGRAS-5) |
| Scaffold_309 | 81717 | Unannotated |
| Scaffold_319 | 56707 | Unannotated |
| Scaffold_319 | 58659 | Unannotated |
| Scaffold_320 | 14646 | Unannotated |
| Scaffold_327 | 44564 | Unannotated |
| Scaffold_327 | 50556 | Unannotated |
| Scaffold_329 | 45252 | Unannotated |
| Scaffold_329 | 66409 | Unannotated |
| Scaffold_336 | 56370 | Unannotated |
| Scaffold_364 | 64523 | 50S ribosomal protein L27, chloroplastic (CL27) |
| Scaffold_370 | 4864 | Unannotated |
| Scaffold_400 | 42990 | Probable inactive histone-lysine N-methyltransferase SUVR2 (Protein SET DOMAIN GROUP 18) (Suppressor of variegation 3-9-related protein 2) (Su(var)3-9-related protein 2) |
| Scaffold_405 | 44288 | Unannotated |
| Scaffold_412 | 9152 | Unannotated |
| Scaffold_414 | 56065 | Unannotated |
| Scaffold_427 | 6282 | Putative calcium-transporting ATPase 11, plasma membrane-type (EC 7.2.2.10) (Ca(2+)-ATPase isoform 11) |
| Scaffold_427 | 49902 | Unannotated |
| Scaffold_427 | 50029 | Unannotated |