| SNPs Id | Position | Function |
| Scaffold_753 | 63657 | Cleavage and polyadenylation specificity factor subunit 3-I (EC 3.1.27.-) (Cleavage and polyadenylation specificity factor 73 kDa subunit I) (AtCPSF73-I) (CPSF 73 kDa subunit I) |
| Scaffold_753 | 64783 | Cleavage and polyadenylation specificity factor subunit 3-I (EC 3.1.27.-) (Cleavage and polyadenylation specificity factor 73 kDa subunit I) (AtCPSF73-I) (CPSF 73 kDa subunit I) |
| Scaffold_760 | 11704 | Unannotated |
| Scaffold_764 | 57597 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_767 | 7119 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_767 | 21814 | tRNA(adenine(34)) deaminase, chloroplastic (TADA) (EC 3.5.4.33) (tRNA adenosine deaminase arginine) (tRNA arginine adenosine deaminase) |
| Scaffold_788 | 62770 | Unannotated |
| Scaffold_798 | 63668 | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 1) (AtTPS1) |
| Scaffold_804 | 40132 | Unannotated |
| Scaffold_853 | 28524 | Protein NRT1/ PTR FAMILY 5.4 (AtNPF5.4) |
| Scaffold_861 | 1159 | Unannotated |
| Scaffold_861 | 55911 | Unannotated |
| Scaffold_862 | 35273 | Unannotated |
| Scaffold_865 | 60828 | Unannotated |
| Scaffold_866 | 58759 | Unannotated |
| Scaffold_868 | 27266 | Unannotated |
| Scaffold_868 | 27739 | Unannotated |
| Scaffold_877 | 3291 | Unannotated |
| Scaffold_878 | 52533 | Unannotated |
| Scaffold_887 | 60473 | Unannotated |