| SNPs Id | Position | Function |
| Scaffold_887 | 60474 | Unannotated |
| Scaffold_894 | 61077 | Unannotated |
| Scaffold_901 | 54611 | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 11) (AtTPS11) |
| Scaffold_901 | 54612 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_914 | 20874 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_937 | 16786 | Unannotated |
| Scaffold_962 | 377 | Unannotated |
| Scaffold_962 | 32973 | Transcription factor DIVARICATA |
| Scaffold_965 | 58012 | Transcription factor DIVARICATA |
| Scaffold_967 | 33095 | Unannotated |
| Scaffold_974 | 49047 | Unannotated |
| Scaffold_990 | 6158 | Unannotated |
| Scaffold_990 | 6390 | Fasciclin-like arabinogalactan protein 2 |
| Scaffold_1009 | 54845 | Unannotated |
| Scaffold_1009 | 54846 | Unannotated |
| Scaffold_1010 | 17255 | Unannotated |
| Scaffold_1013 | 54584 | Unannotated |
| Scaffold_1013 | 55732 | Unannotated |
| Scaffold_1028 | 48543 | ATP sulfurylase 2 (EC 2.7.7.4) |
| Scaffold_1028 | 48545 | Unannotated |