| SNPs Id | Position | Function |
| Scaffold_1047 | 9112 | Unannotated |
| Scaffold_1060 | 32153 | Unannotated |
| Scaffold_1066 | 38009 | Unannotated |
| Scaffold_1066 | 38108 | Unannotated |
| Scaffold_1077 | 54191 | Unannotated |
| Scaffold_1080 | 6115 | Unannotated |
| Scaffold_1085 | 8969 | Unannotated |
| Scaffold_1124 | 50148 | Unannotated |
| Scaffold_1124 | 50149 | Probable carboxylesterase 17 (AtCXE17) (EC 3.1.1.1) |
| Scaffold_1135 | 24722 | Unannotated |
| Scaffold_1182 | 39098 | Unannotated |
| Scaffold_1182 | 48770 | Unannotated |
| Scaffold_1182 | 48771 | Urea-proton symporter DUR3 (AtDUR3) (High-affinity urea active transporter DUR3) |
| Scaffold_1194 | 15085 | Unannotated |
| Scaffold_1210 | 6919 | Eukaryotic translation initiation factor 3 subunit D (eIF3d) (Eukaryotic translation initiation factor 3 subunit 7) (eIF-3-zeta) (p66) |
| Scaffold_1210 | 6920 | Unannotated |
| Scaffold_1229 | 52609 | Unannotated |
| Scaffold_1264 | 9310 | Unannotated |
| Scaffold_1269 | 49728 | Sphingoid long-chain bases kinase 1 (AtLCBK1) (LCB kinase 1) (EC 2.7.-.-) (Sphingosine kinase 1) |
| Scaffold_1273 | 2727 | Unannotated |