| SNPs Id | Position | Function |
| Scaffold_1274 | 8321 | Unannotated |
| Scaffold_1281 | 18107 | Subtilisin-like protease SBT3.9 (EC 3.4.21.-) (Subtilase subfamily 3 member 9) (AtSBT3.9) |
| Scaffold_1300 | 8697 | Unannotated |
| Scaffold_1302 | 2660 | Unannotated |
| Scaffold_1315 | 28889 | Unannotated |
| Scaffold_1328 | 28880 | Unannotated |
| Scaffold_1328 | 28881 | Unannotated |
| Scaffold_1351 | 34257 | Unannotated |
| Scaffold_1356 | 29505 | Protein phosphatase 1 regulatory subunit INH3 (Protein INHIBITOR-3) (AtINH3) |
| Scaffold_1361 | 17569 | Glutathione S-transferase T2 (AtGSTT2) (EC 2.5.1.18) (GST class-theta member 2) (Glutathione S-transferase 10B) |
| Scaffold_1387 | 7794 | Unannotated |
| Scaffold_1387 | 7795 | Unannotated |
| Scaffold_1391 | 14916 | Unannotated |
| Scaffold_1412 | 1141 | Unannotated |
| Scaffold_1431 | 48845 | Unannotated |
| Scaffold_1461 | 33540 | Potassium channel AKT6 (Potassium channel SPIK) (Shaker pollen inward rectifier K(+) channel) |
| Scaffold_1503 | 45742 | Unannotated |
| Scaffold_1507 | 30415 | Unannotated |
| Scaffold_1507 | 30417 | Unannotated |
| Scaffold_1514 | 27566 | Unannotated |