| SNPs Id | Position | Function |
| Scaffold_24 | 1156181 | Unannotated |
| Scaffold_24 | 1300816 | NF-X1-type zinc finger protein NFXL2 (AtNFXL2) (EC 2.3.2.-) (Protein EARLY BIRD) |
| Scaffold_24 | 1537722 | Unannotated |
| Scaffold_24 | 1570857 | Unannotated |
| Scaffold_24 | 1760975 | Transcription factor bHLH14 (Basic helix-loop-helix protein 14) (AtbHLH14) (bHLH 14) (Transcription factor EN 33) (bHLH transcription factor bHLH014) |
| Scaffold_24 | 1967150 | Unannotated |
| Scaffold_24 | 2042534 | Unannotated |
| Scaffold_24 | 2115767 | Unannotated |
| Scaffold_24 | 2211131 | Unannotated |
| Scaffold_25 | 185394 | Vacuolar-sorting receptor 1 (80 kDa proaleurein-binding protein) (BP-80) |
| Scaffold_25 | 261559 | Unannotated |
| Scaffold_25 | 394108 | Unannotated |
| Scaffold_25 | 553728 | Unannotated |
| Scaffold_25 | 654809 | Unannotated |
| Scaffold_25 | 654810 | Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.11.1) |
| Scaffold_25 | 751217 | Unannotated |
| Scaffold_25 | 806534 | Unannotated |
| Scaffold_25 | 806539 | Potassium transporter 8 (AtHAK8) (AtPOT8) |
| Scaffold_25 | 1045739 | Unannotated |
| Scaffold_25 | 1110834 | Unannotated |