| SNPs Id | Position | Function |
| Scaffold_2453 | 24857 | Unannotated |
| Scaffold_2455 | 55897 | Unannotated |
| Scaffold_2455 | 77249 | Unannotated |
| Scaffold_2455 | 78207 | Uncharacterized protein At1g21580 |
| Scaffold_2463 | 38175 | Unannotated |
| Scaffold_2463 | 84295 | Unannotated |
| Scaffold_2463 | 84296 | Unannotated |
| Scaffold_2464 | 107 | Unannotated |
| Scaffold_2464 | 59687 | Unannotated |
| Scaffold_2471 | 105633 | Unannotated |
| Scaffold_2471 | 105634 | Unannotated |
| Scaffold_2474 | 57958 | Unannotated |
| Scaffold_2476 | 126397 | Probable leucine-rich repeat receptor-like protein kinase At5g49770 (EC 2.7.11.1) |
| Scaffold_2477 | 7992 | Unannotated |
| Scaffold_2484 | 2116 | Unannotated |
| Scaffold_2486 | 81556 | Unannotated |
| Scaffold_2486 | 81557 | Unannotated |
| Scaffold_2488 | 25209 | Unannotated |
| Scaffold_2488 | 72375 | Unannotated |
| Scaffold_2491 | 22406 | Calcium-dependent protein kinase 19 (OsCDPK19) (OsCPK19) (EC 2.7.11.1) (Calcium-dependent protein kinase isoform 2) (OsCDPK2) (OsCPK2) |