| SNPs Id | Position | Function |
| Scaffold_2590 | 53840 | Unannotated |
| Scaffold_2590 | 92113 | Unannotated |
| Scaffold_2598 | 54843 | Unannotated |
| Scaffold_2598 | 54983 | Unannotated |
| Scaffold_2605 | 57874 | Unannotated |
| Scaffold_2613 | 60173 | Unannotated |
| Scaffold_2616 | 51170 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2635 | 853 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2641 | 38621 | Unannotated |
| Scaffold_2645 | 90769 | Unannotated |
| Scaffold_2646 | 2781 | B3 domain-containing protein REM19 (Protein RELATED TO VERNALIZATION 1) (Protein REPRODUCTIVE MERISTEM 19) |
| Scaffold_2646 | 55000 | Unannotated |
| Scaffold_2652 | 41779 | Unannotated |
| Scaffold_2652 | 55536 | Unannotated |
| Scaffold_2652 | 55537 | Unannotated |
| Scaffold_2659 | 712 | Unannotated |
| Scaffold_2669 | 62803 | Unannotated |
| Scaffold_2677 | 138624 | Unannotated |
| Scaffold_2678 | 22031 | Unannotated |
| Scaffold_2678 | 167720 | Unannotated |