| SNPs Id | Position | Function |
| Scaffold_2945 | 6264 | Unannotated |
| Scaffold_2953 | 22199 | Unannotated |
| Scaffold_2962 | 9408 | Unannotated |
| Scaffold_2976 | 49730 | Unannotated |
| Scaffold_3008 | 33842 | Unannotated |
| Scaffold_3010 | 49640 | Unannotated |
| Scaffold_3010 | 49703 | Unannotated |
| Scaffold_3017 | 9085 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3017 | 9086 | Unannotated |
| Scaffold_3025 | 45032 | Unannotated |
| Scaffold_3027 | 4006 | Unannotated |
| Scaffold_3027 | 4007 | Unannotated |
| Scaffold_3039 | 51312 | Unannotated |
| Scaffold_3040 | 26831 | Unannotated |
| Scaffold_3046 | 1777 | Unannotated |
| Scaffold_3051 | 5317 | Unannotated |
| Scaffold_3061 | 33699 | Unannotated |
| Scaffold_3068 | 32011 | Unannotated |
| Scaffold_3068 | 32012 | Protein TIC 214 (Translocon at the inner envelope membrane of chloroplasts 214) (AtTIC214) |
| Scaffold_3068 | 54073 | Protein TIC 214 (Translocon at the inner envelope membrane of chloroplasts 214) (AtTIC214) |