| SNPs Id | Position | Function |
| Scaffold_3192 | 182 | Unannotated |
| Scaffold_3192 | 220 | Unannotated |
| Scaffold_3199 | 58834 | Unannotated |
| Scaffold_3199 | 58836 | Unannotated |
| Scaffold_3204 | 14087 | Unannotated |
| Scaffold_3204 | 14655 | Unannotated |
| Scaffold_3209 | 15911 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_3215 | 5298 | Unannotated |
| Scaffold_3229 | 28554 | Unannotated |
| Scaffold_3230 | 40419 | Unannotated |
| Scaffold_3230 | 40420 | Unannotated |
| Scaffold_3233 | 37059 | Unannotated |
| Scaffold_3234 | 19949 | Unannotated |
| Scaffold_3234 | 19950 | Unannotated |
| Scaffold_3243 | 22145 | Unannotated |
| Scaffold_3243 | 22273 | Unannotated |
| Scaffold_3244 | 18179 | Unannotated |
| Scaffold_3244 | 18206 | Unannotated |
| Scaffold_3244 | 18223 | Unannotated |
| Scaffold_3245 | 33306 | Unannotated |