| SNPs Id | Position | Function |
| Scaffold_3251 | 483 | Probable methyltransferase PMT16 (EC 2.1.1.-) |
| Scaffold_3252 | 38984 | Probable methyltransferase PMT16 (EC 2.1.1.-) |
| Scaffold_3264 | 16267 | Unannotated |
| Scaffold_3276 | 42387 | Unannotated |
| Scaffold_3279 | 30597 | Unannotated |
| Scaffold_3280 | 15068 | Unannotated |
| Scaffold_3283 | 43471 | Unannotated |
| Scaffold_3288 | 6166 | Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein) |
| Scaffold_3288 | 6295 | Unannotated |
| Scaffold_3289 | 36583 | Unannotated |
| Scaffold_3297 | 37765 | Unannotated |
| Scaffold_3305 | 20859 | Unannotated |
| Scaffold_3307 | 60391 | Unannotated |
| Scaffold_3312 | 18553 | Unannotated |
| Scaffold_3327 | 15051 | Unannotated |
| Scaffold_3327 | 42753 | Unannotated |
| Scaffold_3336 | 6556 | Unannotated |
| Scaffold_3350 | 30175 | Unannotated |
| Scaffold_3360 | 41434 | Monothiol glutaredoxin-S2 (AtGrxS2) (Protein ROXY 10) |
| Scaffold_3362 | 3416 | Unannotated |