| SNPs Id | Position | Function |
| Scaffold_3365 | 7830 | Unannotated |
| Scaffold_3368 | 3903 | Unannotated |
| Scaffold_3368 | 34974 | Unannotated |
| Scaffold_3373 | 12884 | Unannotated |
| Scaffold_3379 | 2888 | Unannotated |
| Scaffold_3379 | 2889 | Unannotated |
| Scaffold_3385 | 71945 | Unannotated |
| Scaffold_3385 | 71947 | Unannotated |
| Scaffold_3385 | 76359 | Unannotated |
| Scaffold_3395 | 34774 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3396 | 31092 | Unannotated |
| Scaffold_3398 | 42600 | Unannotated |
| Scaffold_3398 | 42608 | Unannotated |
| Scaffold_3412 | 2676 | Unannotated |
| Scaffold_3412 | 2686 | Unannotated |
| Scaffold_3431 | 18551 | Unannotated |
| Scaffold_3442 | 12145 | Unannotated |
| Scaffold_3444 | 18791 | Unannotated |
| Scaffold_3444 | 18792 | Protein CYPRO4 |
| Scaffold_3446 | 4068 | Unannotated |