| SNPs Id | Position | Function |
| Scaffold_3555 | 469 | Unannotated |
| Scaffold_3555 | 470 | Unannotated |
| Scaffold_3556 | 7086 | Unannotated |
| Scaffold_3556 | 7087 | Unannotated |
| Scaffold_3559 | 43066 | Unannotated |
| Scaffold_3559 | 43654 | Unannotated |
| Scaffold_3562 | 1047 | Unannotated |
| Scaffold_3566 | 44569 | Unannotated |
| Scaffold_3574 | 51759 | Unannotated |
| Scaffold_3584 | 41898 | Unannotated |
| Scaffold_3588 | 15907 | Unannotated |
| Scaffold_3595 | 51980 | Unannotated |
| Scaffold_3595 | 51987 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3595 | 52001 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3604 | 16226 | Unannotated |
| Scaffold_3605 | 9309 | Unannotated |
| Scaffold_3612 | 14521 | Unannotated |
| Scaffold_3617 | 7789 | Unannotated |
| Scaffold_3617 | 7795 | Unannotated |
| Scaffold_3619 | 42111 | Unannotated |