| SNPs Id | Position | Function |
| Scaffold_3619 | 59689 | Unannotated |
| Scaffold_3622 | 4531 | Unannotated |
| Scaffold_3622 | 4534 | Unannotated |
| Scaffold_3634 | 19170 | Unannotated |
| Scaffold_3637 | 5995 | Unannotated |
| Scaffold_3652 | 63389 | Unannotated |
| Scaffold_3660 | 15786 | Unannotated |
| Scaffold_3663 | 5704 | Unannotated |
| Scaffold_3663 | 21302 | Unannotated |
| Scaffold_3681 | 19122 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3684 | 32430 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3684 | 32469 | Unannotated |
| Scaffold_3684 | 32528 | NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (NADH-plastoquinone oxidoreductase subunit H) |
| Scaffold_3684 | 32529 | Unannotated |
| Scaffold_3686 | 44925 | Unannotated |
| Scaffold_3689 | 2395 | Unannotated |
| Scaffold_3692 | 48109 | Unannotated |
| Scaffold_3692 | 48182 | Unannotated |
| Scaffold_3704 | 21835 | Unannotated |
| Scaffold_3707 | 64383 | Unannotated |