| SNPs Id | Position | Function |
| Scaffold_3708 | 22907 | Unannotated |
| Scaffold_3711 | 45645 | Unannotated |
| Scaffold_3723 | 50967 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3725 | 36601 | Unannotated |
| Scaffold_3726 | 22672 | Unannotated |
| Scaffold_3731 | 29819 | Unannotated |
| Scaffold_3733 | 43783 | Unannotated |
| Scaffold_3733 | 44026 | Unannotated |
| Scaffold_3749 | 5287 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3757 | 23298 | Unannotated |
| Scaffold_3767 | 50578 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_3771 | 1679 | Glycosyltransferase family 92 protein RCOM_0530710 (EC 2.4.1.-) |
| Scaffold_3771 | 1680 | Unannotated |
| Scaffold_3788 | 46870 | Unannotated |
| Scaffold_3788 | 46919 | Unannotated |
| Scaffold_3798 | 6397 | Unannotated |
| Scaffold_3801 | 725 | Protein Ycf2 |
| Scaffold_3801 | 8058 | Unannotated |
| Scaffold_3803 | 20606 | Unannotated |
| Scaffold_3806 | 3894 | Photosystem I P700 chlorophyll a apoprotein A2 (EC 1.97.1.12) (PSI-B) (PsaB) |