| SNPs Id | Position | Function |
| Scaffold_5 | 968860 | Unannotated |
| Scaffold_5 | 1267854 | Unannotated |
| Scaffold_5 | 1713647 | Transcription factor GTE4 (Bromodomain-containing protein GTE4) (Protein GLOBAL TRANSCRIPTION FACTOR GROUP E4) |
| Scaffold_5 | 1715492 | Galactan beta-1,4-galactosyltransferase GALS3 (EC 2.4.1.-) (Beta-1,4-galactan synthase) (Galactan synthase 3) |
| Scaffold_6 | 145564 | Linoleate 9S-lipoxygenase 6 (EC 1.13.11.58) (Lipoxygenase 1-5) (StLOX1) (lox1:St:3) (Fragment) |
| Scaffold_6 | 174674 | Unannotated |
| Scaffold_6 | 174687 | Unannotated |
| Scaffold_6 | 174728 | Unannotated |
| Scaffold_6 | 174759 | Unannotated |
| Scaffold_6 | 174831 | Unannotated |
| Scaffold_6 | 360854 | Serine/threonine-protein kinase VPS15 (EC 2.7.11.1) (Vacuolar protein sorting-associated protein 15) (AtVPS15) |
| Scaffold_6 | 413653 | Serine/threonine-protein kinase VPS15 (EC 2.7.11.1) (Vacuolar protein sorting-associated protein 15) (AtVPS15) |
| Scaffold_6 | 560141 | Unannotated |
| Scaffold_6 | 900927 | Unannotated |
| Scaffold_6 | 900929 | Unannotated |
| Scaffold_6 | 957163 | Unannotated |
| Scaffold_6 | 1111237 | Unannotated |
| Scaffold_6 | 1125368 | Unannotated |
| Scaffold_6 | 1233694 | GDP-mannose transporter GONST3 (Protein GOLGI NUCLEOTIDE SUGAR TRANSPORTER 3) |
| Scaffold_6 | 1366402 | Unannotated |