| SNPs Id | Position | Function |
| Scaffold_47 | 204222 | Unannotated |
| Scaffold_47 | 318800 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (EC 2.7.11.1) |
| Scaffold_47 | 549936 | Unannotated |
| Scaffold_47 | 553686 | Unannotated |
| Scaffold_47 | 905280 | Unannotated |
| Scaffold_47 | 972879 | Unannotated |
| Scaffold_47 | 998096 | Unannotated |
| Scaffold_47 | 1033298 | Unannotated |
| Scaffold_47 | 1144141 | Unannotated |
| Scaffold_47 | 1146179 | Unannotated |
| Scaffold_47 | 1242119 | Myosin-1 (AtATM1) |
| Scaffold_47 | 1357664 | Myosin-1 (AtATM1) |
| Scaffold_47 | 1357704 | Unannotated |
| Scaffold_47 | 1596094 | Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14.99.-) (AtNCED4) |
| Scaffold_47 | 1629188 | Unannotated |
| Scaffold_47 | 1700248 | Uncharacterized protein At5g39865 |
| Scaffold_47 | 1852209 | Unannotated |
| Scaffold_48 | 288689 | Sugar transport protein 14 (Hexose transporter 14) |
| Scaffold_48 | 326713 | Unannotated |
| Scaffold_48 | 386018 | Unannotated |