| SNPs Id | Position | Function |
| Scaffold_48 | 738810 | Unannotated |
| Scaffold_48 | 899700 | Unannotated |
| Scaffold_48 | 899701 | Unannotated |
| Scaffold_48 | 1106905 | E3 ubiquitin-protein ligase PRT6 (EC 2.3.2.27) (Protein GREENING AFTER EXTENDED DARKNESS 1) (Protein PROTEOLYSIS 6) (RING-type E3 ubiquitin transferase PRT6) |
| Scaffold_48 | 1111619 | Unannotated |
| Scaffold_48 | 1111625 | 50S ribosomal protein L3, chloroplastic (Chloroplastic large ribosomal subunit protein uL3c) |
| Scaffold_48 | 1111682 | Unannotated |
| Scaffold_48 | 1759305 | Unannotated |
| Scaffold_48 | 2018386 | Unannotated |
| Scaffold_48 | 2018387 | Unannotated |
| Scaffold_48 | 2357957 | Unannotated |
| Scaffold_48 | 2485376 | Unannotated |
| Scaffold_49 | 274216 | Unannotated |
| Scaffold_49 | 335354 | Unannotated |
| Scaffold_49 | 430860 | Unannotated |
| Scaffold_49 | 431749 | NADPH-dependent pterin aldehyde reductase (EC 1.1.1.-) |
| Scaffold_49 | 555026 | Unannotated |
| Scaffold_49 | 596399 | Unannotated |
| Scaffold_49 | 663811 | Unannotated |
| Scaffold_49 | 896906 | Unannotated |