| SNPs Id | Position | Function |
| Scaffold_52 | 1544299 | Unannotated |
| Scaffold_52 | 1596681 | Unannotated |
| Scaffold_52 | 1602244 | Unannotated |
| Scaffold_52 | 1715153 | Unannotated |
| Scaffold_53 | 199146 | Unannotated |
| Scaffold_53 | 199179 | Unannotated |
| Scaffold_53 | 932263 | Unannotated |
| Scaffold_53 | 972183 | Sucrose synthase (EC 2.4.1.13) (Nodulin-100) (N-100) (Sucrose-UDP glucosyltransferase) |
| Scaffold_53 | 1240527 | Unannotated |
| Scaffold_53 | 1328218 | ATP-dependent helicase BRM (EC 3.6.4.12) (Protein BRAHMA) (AtBRM) (Protein CHROMATIN REMODELING 2) (AtCHR2) |
| Scaffold_53 | 1328249 | Unannotated |
| Scaffold_53 | 1376391 | 60S ribosomal protein L18a-2 |
| Scaffold_53 | 1804273 | Probable serine/threonine-protein kinase PBL5 (EC 2.7.11.1) (PBS1-like protein 5) (Serine/threonine-protein kinase RLCKVII) |
| Scaffold_54 | 176551 | Probable serine/threonine-protein kinase PBL5 (EC 2.7.11.1) (PBS1-like protein 5) (Serine/threonine-protein kinase RLCKVII) |
| Scaffold_54 | 552922 | Unannotated |
| Scaffold_54 | 915476 | Unannotated |
| Scaffold_54 | 1263494 | Unannotated |
| Scaffold_54 | 1455244 | Unannotated |
| Scaffold_54 | 1485133 | Unannotated |
| Scaffold_55 | 198309 | Unannotated |