| SNPs Id | Position | Function |
| Scaffold_172 | 688042 | Unannotated |
| Scaffold_173 | 17560 | DNA topoisomerase 6 subunit A (AtTOP6A) (EC 5.6.2.2) (Meiotic recombination protein SPO11-3) (AtSPO11-3) (Protein BRASSINOSTEROID INSENSITIVE 5) (Protein ROOT HAIRLESS 2) |
| Scaffold_173 | 80335 | Unannotated |
| Scaffold_173 | 271235 | Unannotated |
| Scaffold_173 | 320435 | Unannotated |
| Scaffold_173 | 428054 | Unannotated |
| Scaffold_173 | 429337 | Unannotated |
| Scaffold_173 | 429338 | Unannotated |
| Scaffold_174 | 19802 | Unannotated |
| Scaffold_174 | 65943 | Chaperone protein ClpB3, chloroplastic (ATP-dependent Clp protease ATP-binding subunit ClpB homolog 3) (Casein lytic proteinase B3) (Protein ALBINO OR PALE GREEN 6) |
| Scaffold_174 | 188800 | Unannotated |
| Scaffold_174 | 341273 | Unannotated |
| Scaffold_174 | 398691 | Unannotated |
| Scaffold_174 | 501388 | Unannotated |
| Scaffold_176 | 80593 | Unannotated |
| Scaffold_176 | 81029 | Unannotated |
| Scaffold_176 | 179274 | Unannotated |
| Scaffold_176 | 341745 | Unannotated |
| Scaffold_177 | 225841 | Unannotated |
| Scaffold_177 | 315682 | Myosin-6 (AtMYA2) |