| SNPs Id | Position | Function |
| Scaffold_254 | 33820 | Unannotated |
| Scaffold_256 | 38047 | Unannotated |
| Scaffold_257 | 52644 | ABC transporter I family member 20 (ABC transporter ABCI.20) (AtABCI20) (GCN-related protein 3) (Non-intrinsic ABC protein 9) |
| Scaffold_257 | 52645 | Protein LHCP TRANSLOCATION DEFECT |
| Scaffold_269 | 6361 | Dicer-like protein 4 (EC 3.1.26.-) |
| Scaffold_277 | 60791 | Zinc finger protein CONSTANS-LIKE 10 |
| Scaffold_277 | 82962 | Unannotated |
| Scaffold_280 | 14538 | Exonuclease V, chloroplastic (Exo V) (EC 3.1.-.-) |
| Scaffold_288 | 82933 | Unannotated |
| Scaffold_289 | 48699 | Unannotated |
| Scaffold_292 | 50479 | Unannotated |
| Scaffold_296 | 68875 | Unannotated |
| Scaffold_297 | 28034 | Unannotated |
| Scaffold_298 | 71131 | Unannotated |
| Scaffold_299 | 3210 | UDP-glucose 4-epimerase GEPI42 (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase) |
| Scaffold_301 | 44890 | Unannotated |
| Scaffold_304 | 9514 | Unannotated |
| Scaffold_325 | 27412 | Scarecrow-like protein 3 (AtSCL3) (GRAS family protein 5) (AtGRAS-5) |
| Scaffold_325 | 70145 | Unannotated |
| Scaffold_327 | 28966 | Unannotated |