| SNPs Id | Position | Function |
| Scaffold_2451 | 116963 | Unannotated |
| Scaffold_2452 | 30040 | Unannotated |
| Scaffold_2453 | 24858 | Unannotated |
| Scaffold_2453 | 25181 | Phospholipase A(1) LCAT3 (EC 3.1.1.32) (Lecithin-cholesterol acyltransferase-like 3) |
| Scaffold_2455 | 55997 | Unannotated |
| Scaffold_2455 | 55998 | Unannotated |
| Scaffold_2455 | 90557 | Aluminum-activated malate transporter 12 (AtALMT12) (Quick anion channel 1) |
| Scaffold_2467 | 69991 | Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC 3.1.3.16) (RNA polymerase II-associated protein 2 homolog) |
| Scaffold_2468 | 127408 | Unannotated |
| Scaffold_2478 | 76062 | Unannotated |
| Scaffold_2479 | 100900 | Unannotated |
| Scaffold_2481 | 35919 | Unannotated |
| Scaffold_2483 | 24985 | Unannotated |
| Scaffold_2488 | 72373 | Unannotated |
| Scaffold_2489 | 14457 | Unannotated |
| Scaffold_2490 | 1005 | Unannotated |
| Scaffold_2490 | 1057 | Protein PIR (PIR of plants) (Protein KLUNKER) (AtSRA1) (Protein PIROGI) |
| Scaffold_2490 | 1097 | Unannotated |
| Scaffold_2491 | 22327 | Unannotated |
| Scaffold_2491 | 22335 | Unannotated |