| SNPs Id | Position | Function |
| Scaffold_2568 | 19238 | Unannotated |
| Scaffold_2568 | 76976 | Unannotated |
| Scaffold_2571 | 70594 | Unannotated |
| Scaffold_2573 | 7244 | Unannotated |
| Scaffold_2573 | 7682 | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic (EC 2.4.1.1) (Starch phosphorylase L-2) |
| Scaffold_2577 | 37036 | UPF0603 protein OsI_019212, chloroplastic |
| Scaffold_2586 | 18302 | 12-oxophytodienoate reductase 2 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 2) (AtOPR2) (OPDA-reductase 2) (4,5-didehydrojasmonate reductase) (EC 1.3.1.-) |
| Scaffold_2586 | 18305 | Unannotated |
| Scaffold_2586 | 89693 | Unannotated |
| Scaffold_2590 | 55002 | Unannotated |
| Scaffold_2590 | 92112 | Unannotated |
| Scaffold_2604 | 46462 | Unannotated |
| Scaffold_2606 | 26278 | Unannotated |
| Scaffold_2607 | 18864 | NADPH-dependent aldo-keto reductase, chloroplastic (AtChlAKR) (EC 1.1.1.-) (Aldo-keto reductase family 4 member C9) |
| Scaffold_2608 | 52945 | Unannotated |
| Scaffold_2611 | 28305 | Unannotated |
| Scaffold_2624 | 66925 | T-complex protein 1 subunit beta (TCP-1-beta) (CCT-beta) (Chaperonin CCT2) |
| Scaffold_2632 | 86679 | Unannotated |
| Scaffold_2645 | 57519 | Unannotated |
| Scaffold_2646 | 49370 | Unannotated |