| SNPs Id | Position | Function |
| Scaffold_2697 | 161382 | Unannotated |
| Scaffold_2698 | 44957 | Unannotated |
| Scaffold_2698 | 45575 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2698 | 45594 | Unannotated |
| Scaffold_2698 | 52626 | Unannotated |
| Scaffold_2698 | 99422 | Unannotated |
| Scaffold_2698 | 132892 | Unannotated |
| Scaffold_2698 | 136704 | Unannotated |
| Scaffold_2698 | 139518 | Unannotated |
| Scaffold_2698 | 191796 | Unannotated |
| Scaffold_2699 | 178166 | Unannotated |
| Scaffold_2699 | 221522 | Unannotated |
| Scaffold_2702 | 41171 | Unannotated |
| Scaffold_2704 | 35820 | Unannotated |
| Scaffold_2704 | 35837 | Unannotated |
| Scaffold_2706 | 551 | Unannotated |
| Scaffold_2708 | 13218 | Unannotated |
| Scaffold_2708 | 13239 | Unannotated |
| Scaffold_2724 | 12171 | Unannotated |
| Scaffold_2724 | 13119 | Unannotated |