| SNPs Id | Position | Function |
| Scaffold_2922 | 47029 | Unannotated |
| Scaffold_2928 | 31678 | Unannotated |
| Scaffold_2929 | 44673 | Unannotated |
| Scaffold_2930 | 37636 | Unannotated |
| Scaffold_2933 | 17977 | Unannotated |
| Scaffold_2938 | 44786 | Unannotated |
| Scaffold_2938 | 44816 | Unannotated |
| Scaffold_2938 | 46862 | Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2] |
| Scaffold_2938 | 48191 | Unannotated |
| Scaffold_2942 | 25425 | Unannotated |
| Scaffold_2942 | 33420 | Unannotated |
| Scaffold_2964 | 16100 | Unannotated |
| Scaffold_2976 | 49395 | Unannotated |
| Scaffold_2987 | 986 | Unannotated |
| Scaffold_3010 | 22332 | Unannotated |
| Scaffold_3010 | 49611 | Unannotated |
| Scaffold_3010 | 49612 | Unannotated |
| Scaffold_3010 | 49620 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3010 | 49696 | Unannotated |
| Scaffold_3010 | 49704 | Unannotated |