| SNPs Id | Position | Function |
| Scaffold_3117 | 26324 | Unannotated |
| Scaffold_3118 | 54649 | Unannotated |
| Scaffold_3122 | 47938 | Unannotated |
| Scaffold_3123 | 60225 | Unannotated |
| Scaffold_3128 | 412 | Unannotated |
| Scaffold_3131 | 57387 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3131 | 57454 | Unannotated |
| Scaffold_3136 | 43183 | Cytochrome b6 |
| Scaffold_3138 | 15079 | Unannotated |
| Scaffold_3138 | 15080 | Unannotated |
| Scaffold_3139 | 44872 | Photosystem II D2 protein (PSII D2 protein) (EC 1.10.3.9) (Photosystem Q(A) protein) |
| Scaffold_3144 | 9005 | Unannotated |
| Scaffold_3144 | 49625 | Unannotated |
| Scaffold_3144 | 49626 | Unannotated |
| Scaffold_3144 | 49665 | Unannotated |
| Scaffold_3155 | 45783 | Unannotated |
| Scaffold_3163 | 33369 | DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) |
| Scaffold_3163 | 43810 | DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) |
| Scaffold_3165 | 8001 | Unannotated |
| Scaffold_3165 | 8006 | Protein Ycf2 |