| SNPs Id | Position | Function |
| Scaffold_3225 | 15317 | Unannotated |
| Scaffold_3225 | 15368 | Unannotated |
| Scaffold_3225 | 15383 | Unannotated |
| Scaffold_3225 | 15426 | Unannotated |
| Scaffold_3226 | 48876 | Unannotated |
| Scaffold_3228 | 29636 | Unannotated |
| Scaffold_3229 | 28527 | Unannotated |
| Scaffold_3234 | 21447 | Unannotated |
| Scaffold_3243 | 73691 | Unannotated |
| Scaffold_3244 | 18167 | Unannotated |
| Scaffold_3244 | 18192 | Unannotated |
| Scaffold_3244 | 18222 | Unannotated |
| Scaffold_3244 | 18244 | Unannotated |
| Scaffold_3248 | 35345 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3249 | 18073 | Unannotated |
| Scaffold_3249 | 18146 | Probable methyltransferase PMT16 (EC 2.1.1.-) |
| Scaffold_3249 | 18169 | Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2) |
| Scaffold_3251 | 472 | Unannotated |
| Scaffold_3252 | 38964 | Unannotated |
| Scaffold_3253 | 41849 | Unannotated |