| SNPs Id | Position | Function |
| Scaffold_2460 | 133211 | Unannotated |
| Scaffold_2463 | 61492 | Unannotated |
| Scaffold_2463 | 61593 | Unannotated |
| Scaffold_2464 | 46923 | Unannotated |
| Scaffold_2471 | 105689 | Unannotated |
| Scaffold_2472 | 127662 | Unannotated |
| Scaffold_2473 | 96721 | Unannotated |
| Scaffold_2474 | 57592 | Unannotated |
| Scaffold_2474 | 59101 | Unannotated |
| Scaffold_2480 | 44847 | Unannotated |
| Scaffold_2480 | 115505 | Organ-specific protein P4 |
| Scaffold_2480 | 115564 | Organ-specific protein P4 |
| Scaffold_2481 | 91918 | Unannotated |
| Scaffold_2482 | 20202 | Unannotated |
| Scaffold_2483 | 42665 | Unannotated |
| Scaffold_2486 | 51153 | Unannotated |
| Scaffold_2486 | 53160 | Mitogen-activated protein kinase 3 (AtMPK3) (MAP kinase 3) (EC 2.7.11.24) |
| Scaffold_2486 | 123072 | Unannotated |
| Scaffold_2486 | 125323 | Unannotated |
| Scaffold_2486 | 125338 | Unannotated |