| SNPs Id | Position | Function |
| Scaffold_2490 | 50447 | Unannotated |
| Scaffold_2490 | 50612 | Unannotated |
| Scaffold_2493 | 57851 | Unannotated |
| Scaffold_2495 | 97601 | Aldehyde dehydrogenase family 2 member C4 (EC 1.2.1.3) (ALDH1a) (Protein REDUCED EPIDERMAL FLUORESCENCE 1) |
| Scaffold_2496 | 37705 | Unannotated |
| Scaffold_2499 | 23039 | Unannotated |
| Scaffold_2500 | 14585 | E3 ubiquitin-protein ligase DIS1 (EC 2.3.2.27) (Drought-induced SINA protein 1) (OsDIS1) (RING-type E3 ubiquitin transferase DIS1) |
| Scaffold_2501 | 36853 | Unannotated |
| Scaffold_2502 | 43695 | Unannotated |
| Scaffold_2502 | 46378 | Unannotated |
| Scaffold_2502 | 57529 | Unannotated |
| Scaffold_2502 | 57531 | Unannotated |
| Scaffold_2502 | 97576 | Unannotated |
| Scaffold_2504 | 69830 | Unannotated |
| Scaffold_2505 | 3946 | SART-1 family protein DOT2 (Protein DEFECTIVELY ORGANIZED TRIBUTARIES 2) (Protein MERISTEM-DEFECTIVE) |
| Scaffold_2519 | 23497 | Unannotated |
| Scaffold_2526 | 70889 | Unannotated |
| Scaffold_2526 | 70897 | Unannotated |
| Scaffold_2526 | 110202 | Unannotated |
| Scaffold_2527 | 1889 | Unannotated |