| SNPs Id | Position | Function |
| Scaffold_11 | 1814525 | Unannotated |
| Scaffold_11 | 1815840 | Unannotated |
| Scaffold_11 | 2195464 | Unannotated |
| Scaffold_11 | 2323893 | Unannotated |
| Scaffold_12 | 48342 | Unannotated |
| Scaffold_12 | 387914 | Unannotated |
| Scaffold_12 | 387944 | Unannotated |
| Scaffold_12 | 388667 | Unannotated |
| Scaffold_12 | 608046 | Unannotated |
| Scaffold_12 | 721692 | Unannotated |
| Scaffold_12 | 722337 | Unannotated |
| Scaffold_12 | 795272 | Unannotated |
| Scaffold_12 | 806514 | Unannotated |
| Scaffold_12 | 807087 | Unannotated |
| Scaffold_12 | 818344 | Unannotated |
| Scaffold_12 | 1086657 | Unannotated |
| Scaffold_12 | 1115391 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (EC 2.7.11.1) (Probable receptor-like serine/threonine-protein kinase LRK10L-1.2) |
| Scaffold_12 | 1124965 | Unannotated |
| Scaffold_12 | 1550462 | Unannotated |
| Scaffold_12 | 1614266 | Unannotated |