| SNPs Id | Position | Function |
| Scaffold_2748 | 19072 | Photosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) |
| Scaffold_2749 | 50320 | Unannotated |
| Scaffold_2749 | 50407 | Unannotated |
| Scaffold_2751 | 35506 | Unannotated |
| Scaffold_2752 | 27461 | Unannotated |
| Scaffold_2756 | 27729 | Unannotated |
| Scaffold_2758 | 1756 | Unannotated |
| Scaffold_2763 | 48242 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_2763 | 48340 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2763 | 48494 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2765 | 26308 | ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) |
| Scaffold_2765 | 49347 | Unannotated |
| Scaffold_2765 | 49366 | Unannotated |
| Scaffold_2765 | 49367 | Unannotated |
| Scaffold_2766 | 18171 | Unannotated |
| Scaffold_2773 | 61418 | Unannotated |
| Scaffold_2773 | 61428 | Unannotated |
| Scaffold_2777 | 34150 | Unannotated |
| Scaffold_2778 | 55592 | Cytochrome b (Complex III subunit 3) (Complex III subunit III) (Cytochrome b-c1 complex subunit 3) (Ubiquinol-cytochrome-c reductase complex cytochrome b subunit) (Fragment) |
| Scaffold_2779 | 47613 | Unannotated |